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1

Eigenvalues and eigenfunctions of the Hückel Hamiltonian for carbon-60

Yuefan Deng, Chen Ning Yang

Journal:

Physics Letters A

Year:

1992

Language:

english

File:

PDF, 644 KB

english, 1992

2

[ACM Press the 24th ACM SIGKDD International Conference - London, United Kingdom (2018.08.19-2018.08.23)] Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining - KDD '18 - Multi-User Mobile Sequential Recommendation

Ye, Zeyang, Zhang, Lihao, Xiao, Keli, Zhou, Wenjun, Ge, Yong, Deng, Yuefan

Year:

2018

Language:

english

File:

PDF, 2.84 MB

english, 2018

3

Analysis of Linpack and power efficiencies of the world’s TOP500 supercomputers

Deng, Yuefan, Zhang, Peng, Marques, Carlos, Powell, Reid, Zhang, Li

Journal:

Parallel Computing

Year:

2013

Language:

english

File:

PDF, 942 KB

english, 2013

4

Formal Total Synthesis of N -Methylmaysenine

Wang, Lin, Gong, Jianxian, Deng, Lujiang, Xiang, Zheng, Chen, Zhixing, Wang, Yuefan, Chen, Jiahua, Yang, Zhen

Journal:

Organic Letters

Year:

2009

Language:

english

File:

PDF, 558 KB

english, 2009

5

A New Era in Computation || Perspectives on Parallel Computing

Yuefan Deng, James Glimm and David H. Sharp

Journal:

Year:

1992

Language:

english

File:

PDF, 2.16 MB

english, 1992

6

Eigenanalysis-based task mapping on parallel computers with cellular networks

Zhang, Peng, Gao, Yuxiang, Fierson, Janet, Deng, Yuefan

Journal:

Mathematics of Computation

Year:

2013

Language:

english

File:

PDF, 7.51 MB

english, 2013

7

Reducing the effects of compressibility in DPD-based blood flow simulations through severe stenotic microchannels

Gao, Chao, Zhang, Peng, Marom, Gil, Deng, Yuefan, Bluestein, Danny

Journal:

Journal of Computational Physics

Year:

2017

Language:

english

File:

PDF, 2.47 MB

english, 2017

8

Lectures, Problems and Solutions for Ordinary Differential Equations || Mathematical Models

Year:

2017

Language:

english

File:

PDF, 1.93 MB

english, 2017

9

Applying Simulated Annealing and Parallel Computing to the Mobile Sequential Recommendation

Ye, Zeyang, Xiao, Keli, Ge, Yong, Deng, Yuefan

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2018

Language:

english

File:

PDF, 1.87 MB

english, 2018

10

Analysis and prediction of hydrogen bonding in protein-DNA complexes using parallel processors

Campbell, Graham, Deng, Yuefan, Glimm, James, Wang, Yuan, Yu, Qiqing, Eisenberg, Mois�s, Grollman, Arthur

Journal:

Journal of Computational Chemistry

Year:

1996

Language:

english

File:

PDF, 1.20 MB

english, 1996

11

Parallel Simulated Annealing by Mixing of States

King-Wai Chu, Yuefan Deng, John Reinitz

Journal:

Journal of Computational Physics

Year:

1999

Language:

english

File:

PDF, 109 KB

english, 1999

12

An Adaptive Load Balancing Method for Parallel Molecular Dynamics Simulations

Yuefan Deng, Ronald F. Peierls, Carlos Rivera

Journal:

Journal of Computational Physics

Year:

2000

Language:

english

File:

PDF, 222 KB

english, 2000

13

Electrostatic force computation for bio-molecules on supercomputers with torus networks

Peter Rissland, Yuefan Deng

Journal:

Parallel Computing

Year:

2007

Language:

english

File:

PDF, 296 KB

english, 2007

14

Global minimization for problems with multiple local minima

Yuefan Deng, James Glimm, Qiqing Yu, Moshe Eisenberg

Journal:

Applied Mathematics Letters

Year:

1993

Language:

english

File:

PDF, 139 KB

english, 1993

15

Performance of the 3D FFT on the 6D network torus QCDOC parallel supercomputer

Bin Fang, Yuefan Deng, Glenn Martyna

Journal:

Computer Physics Communications

Year:

2007

Language:

english

File:

PDF, 461 KB

english, 2007

16

A fine grained parallel smooth particle mesh Ewald algorithm for biophysical simulation studies: Application to the 6-D torus QCDOC supercomputer

Bin Fang, Glenn Martyna, Yuefan Deng

Journal:

Computer Physics Communications

Year:

2007

Language:

english

File:

PDF, 1.61 MB

english, 2007

17

Simulating botulinum neurotoxin with constant pH molecular dynamics in Generalized Born implicit solvent

Yongzhi Chen, Xin Chen, Yuefan Deng

Journal:

Computer Physics Communications

Year:

2007

Language:

english

File:

PDF, 263 KB

english, 2007

18

A detailed analysis of communication load balance on BlueGene supercomputer

Yongzhi Chen, Yuefan Deng

Journal:

Computer Physics Communications

Year:

2009

Language:

english

File:

PDF, 2.29 MB

english, 2009

19

Parallel embedded-atom method simulations with delayed electron density approximations

R.Alan McCoy, Yuefan Deng

Journal:

Computer Physics Communications

Year:

1997

Language:

english

File:

PDF, 598 KB

english, 1997

20

The performance of a supercomputer built with commodity components

Yuefan Deng, Alex Korobka

Journal:

Parallel Computing

Year:

2001

Language:

english

File:

PDF, 382 KB

english, 2001

21

Clustering kinetics of granular media in three dimensions

Shiyi Chen, Yuefan Deng, Xiaobo Nie, Yuhai Tu

Journal:

Physics Letters A

Year:

2000

Language:

english

File:

PDF, 287 KB

english, 2000

22

Long-time molecular dynamics simulations of botulinum biotoxin type-A at different pH values and temperatures

Xin Chen, Yuefan Deng

Journal:

Journal of Molecular Modeling

Year:

2007

Language:

english

File:

PDF, 2.50 MB

english, 2007

23

Simulations of a specific inhibitor of the dishevelled PDZ domain

Xin Chen, Yuefan Deng

Journal:

Journal of Molecular Modeling

Year:

2009

Language:

english

File:

PDF, 408 KB

english, 2009

24

Prediction of Protein Binding to DNA in the Presence of Water-Mediated Hydrogen Bonds

Yuefan Deng, James Glimm, Yuan Wang, Alex Korobka, Moshe Eisenberg, Arthur P. Grollman

Journal:

Journal of Molecular Modeling

Year:

1999

Language:

english

File:

PDF, 193 KB

english, 1999

25

Viscous flow simulation in a stenosis model using discrete particle dynamics: a comparison between DPD and CFD

Rui Feng, Michalis Xenos, Gaurav Girdhar, Wei Kang, James W. Davenport, Yuefan Deng, Danny Bluestein

Journal:

Biomechanics and Modeling in Mechanobiology

Year:

2012

Language:

english

File:

PDF, 796 KB

english, 2012

26

Particle-Based Methods for Multiscale Modeling of Blood Flow in the Circulation and in Devices: Challenges and Future Directions

Takami Yamaguchi, Takuji Ishikawa, Y. Imai, N. Matsuki, Mikhail Xenos, Yuefan Deng, Danny Bluestein

Journal:

Annals of Biomedical Engineering

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

27

Error and timing analysis of multiple time-step integration methods for molecular dynamics

Guowen Han, Yuefan Deng, James Glimm, Glenn Martyna

Journal:

Computer Physics Communications

Year:

2007

Language:

english

File:

PDF, 390 KB

english, 2007

28

An efficient parallel implementation of the smooth particle mesh Ewald method for molecular dynamics simulations

Kwang Jin Oh, Yuefan Deng

Journal:

Computer Physics Communications

Year:

2007

Language:

english

File:

PDF, 580 KB

english, 2007

29

Task mapping on supercomputers with cellular networks

Yongzhi Chen, Yuefan Deng

Journal:

Computer Physics Communications

Year:

2008

Language:

english

File:

PDF, 1.54 MB

english, 2008

30

Approximate energy minimization for large Lennard-Jones clusters

Yuefan Deng, Carlos Rivera

Journal:

Journal of Global Optimization

Year:

2000

Language:

english

File:

PDF, 181 KB

english, 2000

31

Numerical Solutions of a Nonlinear Evolution System with Small Dissipation on Parallel Processors

Chung-Chiang Chou, Yuefan Deng

Journal:

Journal of Scientific Computing

Year:

1998

Language:

english

File:

PDF, 899 KB

english, 1998

32

The energy density and pressure in SU(3) lattice gauge theory at finite temperature

Journal:

Nuclear Physics B - Proceedings Supplements

Year:

1989

Language:

english

File:

PDF, 280 KB

english, 1989

33

[IEEE 2012 13th ACIS International Conference on Software Engineering, Artificial Intelligence, Networking and Parallel & Distributed Computing (SNPD) - Kyoto, Japan (2012.08.8-2012.08.10)] 2012 13th ACIS International Conference on Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing - Simulated Performance Evaluation of a 6D Mesh/iBT Interconnect

Feng, Rui, Zhang, Peng, Deng, Yuefan

Year:

2012

Language:

english

File:

PDF, 1017 KB

english, 2012

34

An analysis of the topological properties of the interlaced bypass torus (iBT) networks

Peng Zhang, Yuefan Deng

Journal:

Applied Mathematics Letters

Year:

2012

Language:

english

File:

PDF, 1.11 MB

english, 2012

35

Numerical Methods for Simulating Ginzburg--Landau Vortices

Mu, Mo, Deng, Yuefan, Chou, Chung-Chiang

Journal:

SIAM Journal on Scientific Computing

Year:

1998

Language:

english

File:

PDF, 214 KB

english, 1998

36

Applied Parallel Computing || INTRODUCTION

Year:

2012

Language:

english

File:

PDF, 297 KB

english, 2012

37

Applied Parallel Computing || HARDWARE SYSTEMS

Year:

2012

Language:

english

File:

PDF, 439 KB

english, 2012

38

Parameterizing the Morse potential for coarse-grained modeling of blood plasma

Zhang, Na, Zhang, Peng, Kang, Wei, Bluestein, Danny, Deng, Yuefan

Journal:

Journal of Computational Physics

Year:

2014

Language:

english

File:

PDF, 2.02 MB

english, 2014

39

Multiscale Particle-Based Modeling of Flowing Platelets in Blood Plasma Using Dissipative Particle Dynamics and Coarse Grained Molecular Dynamics

Zhang, Peng, Gao, Chao, Zhang, Na, Slepian, Marvin J., Deng, Yuefan, Bluestein, Danny

Journal:

Cellular and Molecular Bioengineering

Year:

2014

Language:

english

File:

PDF, 4.03 MB

english, 2014

40

Design and Analysis of Pipelined Broadcast Algorithms for the All-Port Interlaced Bypass Torus Networks

Zhang, Peng, Deng, Yuefan

Journal:

IEEE Transactions on Parallel and Distributed Systems

Year:

2012

Language:

english

File:

PDF, 1.95 MB

english, 2012

41

[IEEE 2013 14th ACIS International Conference on Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing (SNPD) - Honolulu, HI, USA (2013.07.1-2013.07.3)] 2013 14th ACIS International Conference on Software Engineering, Artificial Intelligence, Networking and Parallel/Distributed Computing - Deadlock-Free Routing Algorithms for 6D Mesh/iBT Interconnection Networks

Feng, Rui, Zhang, Peng, Deng, Yuefan

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

42

Interlacing Bypass Rings to Torus Networks for More Efficient Networks

Zhang, Peng, Powell, Reid, Deng, Yuefan

Journal:

IEEE Transactions on Parallel and Distributed Systems

Year:

2011

Language:

english

File:

PDF, 3.70 MB

english, 2011

43

Nature of the Deconfining Phase Transition in SU(3) Lattice Gauge Theory

Brown, Frank R., Christ, Norman H., Deng, Yuefan, Gao, Mingshen, Woch, Thomas J.

Journal:

Physical Review Letters

Year:

1988

Language:

english

File:

PDF, 648 KB

english, 1988

44

A phenomenological particle-based platelet model for simulating filopodia formation during early activation

Pothapragada, Seetha, Zhang, Peng, Sheriff, Jawaad, Livelli, Mark, Slepian, Marvin J., Deng, Yuefan, Bluestein, Danny

Journal:

International Journal for Numerical Methods in Biomedical Engineering

Year:

2015

Language:

english

File:

PDF, 1.86 MB

english, 2015

45

Evaluation of Various Networks Configurated by Adding Bypass or Torus Links

Zhang, Peng, Deng, Yuefan, Feng, Rui, Luo, Xingguo, Wu, Jiangxing

Journal:

IEEE Transactions on Parallel and Distributed Systems

Year:

2015

Language:

english

File:

PDF, 1.88 MB

english, 2015

46

SYMMETRY INSIGHTS FOR DESIGN OF SUPERCOMPUTER NETWORK TOPOLOGIES: ROOTS AND WEIGHTS LATTICES

DENG, YUEFAN, RAMOS, ALEXANDRE F., HORNOS, JOSÉ EDUARDO M.

Journal:

International Journal of Modern Physics B

Year:

2012

Language:

english

File:

PDF, 210 KB

english, 2012

47

Lectures, Problems and Solutions for Ordinary Differential Equations || Appendices

Year:

2014

Language:

english

File:

PDF, 1.50 MB

english, 2014

48

A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma

Zhang, Peng, Zhang, Na, Deng, Yuefan, Bluestein, Danny

Journal:

Journal of Computational Physics

Year:

2015

Language:

english

File:

PDF, 2.50 MB

english, 2015

49

A data-driven paradigm for mapping problems

Zhang, Peng, Liu, Ling, Deng, Yuefan

Journal:

Parallel Computing

Year:

2015

Language:

english

File:

PDF, 6.75 MB

english, 2015

50

Lectures, Problems and Solutions for Ordinary Differential Equations || Laplace Transforms

Year:

2014

Language:

english

File:

PDF, 494 KB

english, 2014